adibvafa / token-classification updated 10 months ago

CodonTransformer

CodonTransformer is the ultimate tool for codon optimization, transforming protein sequences into optimized DNA sequences specific for your target organisms. Whether you are a researcher or a practitioner in genetic engineering, CodonTransformer provides a comprehensive suite of features to facilitate your work. By leveraging the Transformer architecture and a user-friendly Jupyter notebook, it reduces the complexity...

Params
90 M
Context
4,096
Downloads 30d
270 K
Likes
9
Commercial use: allowed apache-2.0 Not gated SAFETENSORS View on Hugging Face ↗

Download history

daily snapshots · 30 days
325 K270 K
Aug 22Sep 1Sep 11Sep 20

Can you run it?

Estimated VRAM at 8K context unless noted. Pick your hardware to see the verdict per quantization.

FileQuantSizeEst. VRAMVerdict on RTX 4090 · 24 GB
model.safetensors f32 0.4 GB 0.9 GB ✅ Runs comfortably
Estimate: file size × 1.1 + KV cache at 8K + 0.5 GB overhead. Not a benchmark — how we calculate this.

Specifications

Architecture
BigBirdForMaskedLM
Parameters
90 M
Tensor type
F32
Context length
4,096
Vocabulary
90
Layers / heads
12 / 12
Licence
apache-2.0
First seen on the Hub
2024-05-24
Training datasets
undisclosed
Added to our catalog
2026-08-22
Compare with any token-classification model